These ideas were done by Carrington388 in his Cipher/Snagem Threat set. They will also be in this set. Carrington388, the credit still goes to you for these ideas.
Here's some additional Trainer card e-Reader data:
Scan all of the Cipher Admin I-A and II-B cards into the e-Reader, connected to Ruby/Sapphire. This is a Battle Tower challenge where you'll face six Team Cipher employees, all with six L100 Pokémon.
When you talk to the receptionist, you'll get a special conversation. It goes like this:
"TEAM CIPHER has invaded the BATTLE TOWER. Six crime bosses have been taking out all who dares to challenge. Will you take the challenge?"
Then you're prompted yes or no. Say no and you'll get "I hope you'll be able to take the challenge sometime." Say yes and get the following:
"Each of the crime lords had 6 Pokémon. Just to be fair, you get to take 6 Pokémon into the challenge, with no level limits." (That means that you can take any Pokémon into this challenge, regardless of level, as long as they're six different kinds.)
Afterwards, you'll be checked for whether you're trying to take eggs in. If you have an egg, you'll get the usual "you can't take an egg in" message, and the conversation reverts to the no choice above. If you've got only Pokémon, you'll be let into the Battle Tower.
You'll face the Trainers in the order they were taken down in Pokémon Colosseum. Here's what Pokémon they have and the phrase they use at the start of the fight (and, if necessary, the prize for beating that trainer):
Miror B.
Official Tower Name: CIPHER ADMIN MIROR B.
Phrase: "Get me a jukebox, it's time to groove!"
Pokémon: L100 Lotad, L100 Lombre, L100 Ludicolo, L100 Exploud, L100 Armaldo, L100 Sudowoodo
NOTE: An instrumental of Miror B.'s theme plays during this battle.
Dakim
Official Tower Name: CIPHER ADMIN DAKIM
Phrase: "I control the earth! You can't win!"
Pokémon: L100 Solrock, L100 Claydol, L100 Swampert, L100 Flygon, L100 Houndoom, L100 Entei
Venus
Official Tower Name: CIPHER ADMIN VENUS
Phrase: "I'm your VENUS, on location from HOENN's BATTLE TOWER!"
Pokémon: L100 Meganium, L100 Blissey, L100 Raichu, L100 Dusclops, L100 Milotic, L100 Suicune
Ein
Official Tower Name: CIPHER ADMIN EIN
Phrase: "I'll get that WES! He thwarted our caper!"
Pokémon: L100 Manectric, L100 Rhydon, L100 Crobat, L100 Mantine, L100 Gyarados, L100 Raikou
Nascour
Official Tower Name: CIPHER NASCOUR
Phrase: "Reduced from REALGAM TOWER show battles to this trashy place?"
Pokémon: L100 Blaziken, L100 Walrein, L100 Xatu, L100 Dusclops, L100 Gardevoir, L100 Metagross, L100 Alakazam
NOTE: Nascour is not following the Battle Tower rules. The turn after Blaziken goes down, he'll skip a turn to illegally swap Blaziken for Alakazam in his lineup.
After Winning: Recieve 1 Master Ball as a reward for clearing a rulebreaker from the challenge
Evice
Official Tower Name: CIPHER HEAD EVICE
Phrase: "There you are! You clear my underlings, you deal with me!"
Pokémon: L100 Slaking, L100 Slowking, L100 Scizor, L100 Machamp, L100 Salamence, L100 Tyranitar, L100 Aggron
NOTE: Evice is not following the Battle Tower rules. The turn after Slaking goes down, he'll skip a turn to illegally swap Slaking for Aggron in his lineup.
After Winning: Recieve 1 Master Ball as a reward for clearing a rulebreaker from the challenge
If you scan only the certain admin's I-A and II-B card, you'll face the admin alone in the room in Mossdeep with 3 of their lineup. Nascour and Evice still break the rules and bring their illegal swap into their lineup.
Scan all of the Snagem boss I-A and II-B cards into the e-Reader, connected to Ruby/Sapphire. This is a Battle Tower challenge where you'll face three Team Snagem employees, all with six L100 Pokémon.
When you talk to the receptionist, you'll get a special conversation. It goes like this:
"TEAM SNAGEM has invaded the BATTLE TOWER. Three shady fellows have been taking out all who dares to challenge. Will you take the challenge?"
Then you're prompted yes or no. Say no and you'll get "I hope you'll be able to take the challenge sometime." Say yes and get the following:
"Each of the shady guys had 6 Pokémon. Just to be fair, you get to take 6 Pokémon into the challenge, with no level limits." (That means that you can take any Pokémon into this challenge, regardless of level, as long as they're six different kinds.)
Afterwards, you'll be checked for whether you're trying to take eggs in. If you have an egg, you'll get the usual "you can't take an egg in" message, and the conversation reverts to the no choice above. If you've got only Pokémon, you'll be let into the Battle Tower.
You'll face the Trainers in the order they were taken down in Pokémon Colosseum. Here's what Pokémon they have and the phrase they use at the start of the fight (and, if necessary, the prize for beating that trainer):
Gonzap
Official Tower Name: SNAGEM HEAD GONZAP
Phrase: "Be careful or I'll steal that <Pokémon> of yours!"
<Pokémon>: The Pokémon at the head of your party.
Pokémon: L100 Granbull, L100 Breloom, L100 Crawdaunt, L100 Armaldo, L100 Machamp, L100 Skarmory, L100 Gyarados
NOTE: Gonzap is not following the Battle Tower rules. The turn after Granbull goes down, he'll skip a turn to illegally swap Granbull for Gyarados in his lineup.
After Winning: Recieve 1 Master Ball as a reward for clearing a rulebreaker from the challenge
Agnol
Official Tower Name: DEEP KING AGNOL
Phrase: "Haven't tried battling where it's light, but I might like it."
Pokémon: L100 Kingdra, L100 Shedinja, L100 Girafarig, L100 Sableye, L100 Skarmory, L100 Shuckle
Fein
NOTE: Fein enters the challenge with the main character's sprite, then switch to his own after saying the phrase.
Official Tower Name: SHADY GUY FEIN
Phrase: "You against yourself? Fooled you!"
Pokémon: L100 Gyarados, L100 Milotic, L100 Houndoom, L100 Armaldo, L100 Manectric, L100 Togetic
If you scan only the certain admin's I-A and II-B card, you'll face the admin alone in the room in Mossdeep with 3 of their lineup. Gonzap will still break the rules and bring his illegal swap into his lineup.
Scan the Snagem boss I-B and II-A cards to perform a mission in FireRed/LeafGreen. To do this, you'll have to have already obtained both HM03 and HM04. Head for the Safari Zone and pay to enter. When the person who takes your money sees Team Snagem grunts, though, he'll give you unlimited steps and 99 Safari Balls to clear Team Snagem out of the park. Your mission is to successfully steal all of the Pokémon that are held by the grunts using only the Safari Balls. Here's a listing of what's to steal (NOTE: All Team Snagem members are male):
Center Area
Team Snagem Arnold: L16 Bellsprout, L19 Sandshrew
Team Snagem Bob: L18 Ekans
Team Snagem Chris: L15 Scyther, L15 Pinsir
Area 1
Team Snagem Daniel: L16 Oddish, L19 Psyduck
Team Snagem Ernie: L18 Slowpoke
Team Snagem Fred: L15 Growlithe, L15 Vulpix
Area 2
Team Snagem Gervase: L20 Treecko, L20 Torchic, L20 Mudkip
Team Snagem Harold: L21 Omanyte, L22 Kabuto
Team Snagem Ian: L18 Lileep, L18 Anorith, L18 Delibird, L18 Murkrow, L18 Mantine
Area 3
Team Snagem Jack: L19 Skarmory, L19 Lotad, L19 Seedot
Team Snagem Kevin: L19 Sableye, L19 Mawile, L18 Zangoose, L18 Seviper
Team Snagem Lewis: L20 Solrock, L20 Lunatone, L20 Beldum
The game is up when you've either snagged all 30 Pokémon or you've used up all 99 Safari Balls. Each Pokémon may be snagged only once. If you miss any, you can repeat the mission to steal the rest of them, but you'll get only 69 Safari Balls instead of 99.
If you do manage to snag all of the Pokémon, you'll get a 10,000 cash reward plus 200 more cash for each remaining Safari Ball from the original 99 (if you recieved 69 at the start, you get no cash).
If you scan the Cipher Admin I-B and II-A cards into Colosseum, you can perform a new mission. Watch any TV and you'll hear of a Team Cipher invasion of Phenac City. Ten Team Cipher grunts have placed themselves all over Phenac City, and you'll have to find them. Each of them has a L40 Raichu and a shadow Pokémon. Here's a list of shadow Pokémon and hiding places:
Cipher Peon Maria (female): Hides in Pokémon Center upper floor, Shadow Pokémon L30 Omanyte
Cipher Peon Nathan (male): Hides in Es Cade's house lower floor, Shadow Pokémon L30 Kabuto
Cipher Peon Ophelia (female): Hides in Pre Gym upper floor, Shadow Pokémon L30 Aerodactyl
Cipher Peon Paul (male): Hides in Pre Gym lower floor, Shadow Pokémon L30 Lileep
Cipher Peon Quincy (male): Hides in Phenac Stadium lobby, Shadow Pokémon L30 Anorith
Cipher Peon Ruby (female): Hides in Pokémon Center lower floor, Shadow Pokémon L50 Regirock
Cipher Peon Sally (female): Hides in Es Cade's house upper floor, Shadow Pokémon L50 Regice
Cipher Peon Tom (male): Runs behind Dash around the fountain, Shadow Pokémon L50 Registeel
Cipher Peon Urkel (male): Ambushes any exiting person, Shadow Pokémon L70 Latios
Cipher Peon Valerie (female): Ambushes entry into any building other than Pokémon Center, Pre Gym, Phenac Stadium, and Es Cade's house, Shadow Pokémon L70 Latias
This mission may be done only once.
