I almost feeling too much like people here really are actually getting dangerously close to cheating. Anything you do to "ensure" good starts is simply not right.
There's a big difference between "ensuring good starts" and "ensuring as few bad starts". If you look at my step 3, I clearly state that I shuffled one last time after breaking up clumps. If doing this i equivalent to cheating, then all forms of self-shuffling would be considered cheating, because you can argue that his "style" of shuffling is letting him "ensure" a good start.
I mean really, if you see a stack of energy cards together, who WOULDN'T break up the clump?
Point is, there's no rule that limits you to how many times you shuffle. Whether you break up one clump or ten clumps doesn't matter (unless you're stalling), because so long as you shuffle your deck in the usual manner afterward, it would still be perfectly legal.
I think the root of the problem here is whether the situation happens during setup (i.e. before the game), during the game, or after. There is no rule that prohibit a player from looking through his deck before shuffling it, as long as he does not attempt a stack-shuffle. Similarly, during a game, there is no rule that states that you cannot rearrange your cards during a search, so long as the final requirement of randomly shuffling your deck is done.
And obviously there's no rule whatsoever that prevents you from doing anything to your deck after a game.
So until a player actually breaks a rule (stalling, INTENTIONAL cheating, intimidating, rules lawyering, dubious game action, etc), anything else you do is perfectly legal.
IF at the end of this post you still regard such shuffling as cheating, remember that you, the opponent, has the
RIGHT to shuffle or cut the deck one last time, and if both players are still unhappy, just get a judge to shuffle it again.
And that should be a sufficient enough action.
EDIT: Good reference from good compendium, thanks to the other thread.
Q. I was playing with this guy and he rearranged the order of the cards in his deck prior to shuffle it, would this be allowed in a tournament?
A. Yes but you would have the right to shuffle it yourself or cut it as well if you were uncomfortable with his shuffling method. (Sep 14, 2000 WotC Chat, Q125)
Q. I play an Oracle, and search for two cards. While I am searching, I find that I have a HUGE energy pocket coming up. So I break it up and add some trainers in between them. I then shuffle and put 2 cards on top. Is that legal?
A. As long as you shuffle sufficiently afterwards. (Mar 25, 2004 PUI Rules Team)
So there you go. Perfectly legal.